Multiple Sequence Alignment

Chapter "Alignment of Biological Sequences with Jalview" is available open access under a Creative Commons Attribution 4. 0 International License via link. springer. com.

The Clustal Omega Multiple Alignment Package. - Phylogeny-Aware Alignment with PRANK and PAGAN. - Fast and Accurate Multiple Sequence Alignment with MSAProbs-MPI. - Aligning Protein-Coding Nucleotide Sequences with MACSE. - Cooperation of Spalm and Prrn5 for Construction of Gene-Structure-Aware Multiple Sequence Alignment. - Multiple Sequence Alignment Computation using the T-Coffee Regressive Algorithm Implementation. - Multiple Sequence Alignment for Large Heterogeneous Datasets using SATé, PASTA, and UPP. - Sequence Comparison without Alignment: The SpaM Approaches. - Lamassemble: Multiple Alignment and Consensus Sequence of Long Reads. - Automated Removal of Non-Homologous Sequence Stretches with PREQUAL. - Analysis of Protein Intermolecular Interaction with MAFFT-DASH. - Mustguseal and Sister Web-Methods: A Practical Guide to Bioinformatic Analysis of Protein Superfamilies. - Alignment of Biological Sequences with Jalview. - Evolutionary Sequence Analysis and Visualization with Wasabi. - Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation. - NCBI Genome Workbench: Desktop Software for Comparative Genomics, Visualization, and GenBank Data Submission. - Revisiting Evaluation of Multiple Sequence Alignment Methods.