Plant Comparative Genomics

Orthology Prediction and Phylogenetic Analysis Methods in Plants. - Species Tree Inference with SNP Data. - High-Throughput Evolutionary Comparative Analysis of Long Intergenic Non-Coding RNAs in Multiple Organisms. - NGS-Indel Coder v2. 0: A Streamlined Pipeline to Code Indel Characters in Phylogenomic Data. - An SGSGeneloss-Based Method for Constructing a Gene Presence/Absence Table Using Mosdepth. - POInT: A Tool for Modeling Ancient Polyploidies Using Multiple Polyploid Genomes. - Searching for Homologous Genes Using Daisychain. - Detecting MicroRNAs in Plant Genomes with miRkwood. - Pangenome Analysis of Plant Transcripts and Coding Sequences. - Metagenomics Bioinformatic Pipeline. - Rhizosphere and Endosphere Bacterial Communities Survey by Metagenomics Approach. - Applying Synteny Networks (SynNet) to Study Genomic Arrangements of Protein-Coding Genes in Plants. - Plant In Situ Hi-C Experimental Protocol and Bioinformatic Analysis. - Isolation of
Boechera stricta
Developing Embryos for Hi-C. - Discovering the Secrets of Ancient Plants: Recovery of DNA from Museum and Archaeological Plant Specimens. - Use of Allele-Specific Amplification for Rapid Identification of Aromatic and Non-Aromatic Rice Germplasms. - Efficient Protein Extraction Protocols for NanoLC-MS/MS Proteomics Analysis of Plant Tissues with High Proteolytic Activity: A Case Study with Pineapple Pulp.