Post-Transcriptional Gene Regulation

Introduction to Bioinformatics Resources for Post-Transcriptional Regulation of Gene Expression. - Predicting RNA Secondary Structure Using

In Vitro and In Vivo

Data. - RBPmap: A Tool for Mapping and Predicting the Binding Sites of RNA-Binding Proteins Considering the Motif Environment. - Analysis of mRNA Translation by Polysome Profiling. - Exploring Ribosome-Positioning on Translating Transcripts with Ribosome Profiling. - Identification of RNA Binding Partners of CRISPR-Cas Proteins in Prokaryotes Using RIP-Seq. - Rapidly Characterizing CRISPR-Cas13 Nucleases Using Cell-Free Transcription-Translation Systems. - Studying RNP Composition with RIP. - PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites. - A Pipeline for Analyzing eCLIP and iCLIP Data with
htseq-clip
and
DEWSeq
. - Identification of miRNAs Bound to an RNA of Interest by MicroRNA Capture Affinity Technology (miR-CATCH). - Identifying the Protein Interactomes of Target RNAs Using HyPR-MS. - Visualization and Quantification of Subcellular RNA Localization Using Single Molecule RNA Fluorescence In Situ Hybridization. - Single-Molecule RNA Imaging Using Mango II Arrays. - Genome-Wide Identification of Polyadenylation Dynamics with TED-Seq. - In Vivo RNA Structure Probing with DMS-MaPseq. - Transcriptome-Wide Profiling of RNA Stability. - High-Throughput Quantitation of Yeast uORF Regulatory Impacts Using FACS-uORF. - m
⁶
A RNA Immunoprecipitation Followed by High-Throughput Sequencing to Map N
⁶
-Methyladenosine. - Detecting m
⁶
A with In Vitro DART-Seq. - Target-Specific Profiling of RNA m
⁵
C Methylation Level Using Amplicon Sequencing. - Transcriptome-Wide Identification of 2' -
O
-Methylation Sites with RibOxi-Seq.